Galaxy@SLU is located at Department of Pharmacology and Physiology, Saint Louis University School of Medicine, St. Louis, MO, USA. It is a publicly accessible server based on Galaxy, one of the most popular open-source bioinformatics Data Analysis Platform under Python. Galaxy's graphical interface has made it highly attractive among scientists worldwide. As a Galaxy platform, Galaxy@SLU aims to provide standard and custom-built bioinformatics tools with special focus on ChIP-Seq, RNA-Seq, single-cell RNA-Seq, Gene Expression and Cancer Genomics (e.g. TCGA).
Provide analysis tools for peak calling (MACS), motif discovery (Homer), Genomic Mapping (BWA, STAR, Samtools) and Genome Browser Visualization.
Provide tools for transcriptomic analysis (Cufflinks, HTSeq, TopHat) and differential gene expression (edgeR, DESeq).
Provide tools for single-cell RNA-Seq anaysis (Seurat).