Galaxy@SLU

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Bioinformatics Platform Specialized In Cistrome, Transcriptome, and Cancer Genomics

About

Galaxy@SLU is located at Department of Pharmacology and Physiology, Saint Louis University School of Medicine, St. Louis, MO, USA. It is a publicly accessible server based on Galaxy, one of the most popular open-source bioinformatics Data Analysis Platform under Python. Galaxy's graphical interface has made it highly attractive among scientists worldwide. As a Galaxy platform, Galaxy@SLU aims to provide standard and custom-built bioinformatics tools with special focus on ChIP-Seq, RNA-Seq, single-cell RNA-Seq, Gene Expression and Cancer Genomics (e.g. TCGA).

Toolbox

ChIP-Seq

Provide analysis tools for peak calling (MACS), motif discovery (Homer), Genomic Mapping (BWA, STAR, Samtools) and Genome Browser Visualization.

RNA-Seq

Provide tools for transcriptomic analysis (Cufflinks, HTSeq, TopHat) and differential gene expression (edgeR, DESeq).

scRNA-Seq

Provide tools for single-cell RNA-Seq anaysis (Seurat).